A B C D E F G H I L M N O P R S T U V W

A

AbstractDataComponent - Class in org.generationcp.core

An implementation of a parent of all basic components (data sources, data consumers and data transformers) - providing metadata for them, and few basic utiliuties.

AbstractDataConsumer - Class in org.generationcp.core.dataconsumer

This implementation provides a default implementation of the most of the DataConsumer methods, except the implementation of the DataConsumer.consume(org.generationcp.core.PropertyChannel, java.lang.String, org.generationcp.core.ConsumableType) method that is left to the implementing subclass.

AbstractDataSource - Class in org.generationcp.core.datasource

An abstract superclass implementation of the DataSource interface.

AbstractDataSourceFactory<T> - Class in org.generationcp.core.datasource

This class is a simple implementation of the org.generationcp.core.datasource.DataSourceFactory interface.

AbstractDataSourceFactory() - Constructor for class org.generationcp.core.datasource.AbstractDataSourceFactory

Empty constructor for for classes that extend this class.

AbstractDataTransformer - Class in org.generationcp.core.datatransformer

A class providing a default implementation of a data transformer and several utility methods for sub-classes, the real data transformers.

addAttributeName(String) - Method in class org.generationcp.core.datasource.SearchFilter

addAvailableAttribute(DataTypeAttribute) - Method in class org.generationcp.core.DefaultDataType

Add an "available" attribute to this data type.

addDataConsumer(DataConsumer) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Add a data consumer to this registry.

addDataSource(T) - Method in class org.generationcp.core.datasource.AbstractDataSourceFactory

adds a DataSource object to the list of datasources for this factory

addDataSource(DataSource) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Add a data source to this registry.

addDataTransformer(DataTransformer) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Add a data transformer to this registry.

addDataType(DataType) - Method in class org.generationcp.core.datasource.AbstractDataSource

addMessage(String, String) - Method in exception org.generationcp.core.datatransformer.TransformationParameterException

Add one single error message.

addMessages(TransformationParameterException) - Method in exception org.generationcp.core.datatransformer.TransformationParameterException

Add error messages and the causing parameter names from the given exception.

addMetaData(String, Object) - Method in class org.generationcp.core.AbstractDataComponent

Add one name/value pair of metadata to this component.

addOption(String, String, Object) - Method in class org.generationcp.core.datasource.AbstractDataSource

Add an option for a given data type.

addOutputType(ConsumableType) - Method in class org.generationcp.core.datatransformer.TransformationDef

Add a new output type provided (in some circumstances) by this transformation.

addOutputType(String) - Method in class org.generationcp.core.datatransformer.TransformationDef

Create a new consumable type and add it as a type provided (in some circumstances) by this transformation.

addParameterDef(TransformationParameterDef) - Method in class org.generationcp.core.datatransformer.TransformationDef

Add a new parameter definition.

addProgressListener(ProgressListener) - Method in interface org.generationcp.core.datasource.WritableDataSource

Add a listener for progress events with in the data source.

addProgressListener(ProgressListener, String) - Method in interface org.generationcp.core.datasource.WritableDataSource

Add a listener for a specific process with in the data source.

addProgressListener(ProgressListener) - Method in class org.generationcp.core.events.ProgressSupport

addProgressListener(String, ProgressListener) - Method in class org.generationcp.core.events.ProgressSupport

addPropertyChangeListener(PropertyChangeListener) - Method in class org.generationcp.core.DefaultPropertyChannel

addPropertyChangeListener(PropertyChangeListener) - Method in interface org.generationcp.core.PropertyChannel

Register a listener.

addSearchableAttribute(DataTypeAttribute) - Method in class org.generationcp.core.DefaultDataType

Add a searchable attribute to this data type.

addSupportedTypes(ConsumableType, ConsumableType) - Method in class org.generationcp.core.dataconsumer.AbstractDataConsumer

Add a new pair of an input consumable type and an output consumable type.

addTransformationDef(TransformationDef) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

Add a new transformation to a list of those supported by this data transformer.

addValue(Object) - Method in class org.generationcp.core.datasource.SearchFilter

ANALYSIS - Static variable in interface org.generationcp.core.ontology.Context

It defines a "Analysis" context.

APPLICATION_EXCEL - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

APPLICATION_FLAPJACK - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

APPLICATION_GIF - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

APPLICATION_NETCEF - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

APPLICATION_ZIP - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

ATTRIBUTE_DELIMITER - Static variable in interface org.generationcp.core.ontology.LSID

Delimiter used for separating the concatentated data type attribute identifier strings

B

BaseEvent - Class in org.generationcp.core.events

A base (partly immutable) class representing any event.

BaseEvent(Object, String) - Constructor for class org.generationcp.core.events.BaseEvent

A constructor taking a general message carried on by this event, and the source of this event.

BaseEvent(String) - Constructor for class org.generationcp.core.events.BaseEvent

A constructor taking a general message carried on by this event.

C

canConsume() - Method in class org.generationcp.core.dataconsumer.AbstractDataConsumer

canConsume(ConsumableType) - Method in class org.generationcp.core.dataconsumer.AbstractDataConsumer

canConsume(ConsumableType) - Method in interface org.generationcp.core.dataconsumer.DataConsumer

Check if this data consumer is able to digest given consumableType.

canConsume() - Method in interface org.generationcp.core.dataconsumer.DataConsumer

Return all types that this data consumer can digest (display, transform, render, analyze, etc.)

canTransform() - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

canTransform(ConsumableType) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

canTransform() - Method in interface org.generationcp.core.datatransformer.DataTransformer

Return all types that this data transformer can digest (transform).

canTransform(ConsumableType) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Check if this data transformer is able to digest given consumableType.

Category - Interface in org.generationcp.core.ontology

Predefined constants for various value categories, used in DataConsumers.

CLASS - Static variable in interface org.generationcp.core.ontology.Category

This category indicates that a value is a Java class.

CLASS_ID_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

The first part of a class identifier string

CLASS_NAME - Static variable in interface org.generationcp.core.ontology.Category

This category indicates that a value is string containing a full name of a Java class.

Classification - Interface in org.generationcp.core.ontology

Predefined constants for various Classifications , used in Identifications.

CONSTRAINT - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "constraint".

CONSUMABLE_TYPE_ID_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

The first part of a consumable type identifier string

ConsumableType - Class in org.generationcp.core

This is a container for holding information about what a data consumer can consume, or what a data transformer can transform.

ConsumableType(String, Object, String, boolean) - Constructor for class org.generationcp.core.ConsumableType

ConsumableType(String, String, Object, String, boolean) - Constructor for class org.generationcp.core.ConsumableType

ConsumableType(String, String, Object, String, boolean, String) - Constructor for class org.generationcp.core.ConsumableType

ConsumableType(String, String, Object, String, boolean, String, String[]) - Constructor for class org.generationcp.core.ConsumableType

consume(PropertyChannel, String, ConsumableType) - Method in interface org.generationcp.core.dataconsumer.DataConsumer

Return the data property name of a property object which can be found in the given 'propertyChannel'.

containsKey(Object) - Method in interface org.generationcp.core.PropertyChannel

Return true if this channel contains property with the given 'key'.

Context - Interface in org.generationcp.core.ontology

Predefined constants for various contexts, used in DataConsumers.

convert2types(String, Map<String, String>) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

Take a map of parameter names and values where all values are of type String and convert them to another map where values are converted to their proper types, as defined for the given transformation in each individual parameter definition.

createAttributeDataTypeIdentifier(Class, Class, String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for an atrribute data type based on the interface or class of the attribute, the parent interface or class of the attribute and the name of the attrbute.

createAttributeDataTypeIdentifier(String, String, String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for an atrribute data type based on the interface or class of the attribute, the parent interface or class of the attribute and the name of the attrbute.

createClassfication(String[], String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates a new Indetification classification from an existing classification by adding additional element to the array.

createDataTypeAttributeIdentifier(Class, Class, String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for an data atrribute type based on the interface or class of the attribute, the parent interface or class of the attribute and the name of the attrbute.

createDataTypeAttributeIdentifier(String, String, String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for an data type atrribute based on the interface or class of the attribute, the parent interface or class of the attribute and the name of the attrbute.

createDataTypeIdentifier(Class) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for a data type based on the interface or class it represents.

createDataTypeIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Creates an identifier for a data type based on the interface or class it represents.

createLSID(String, String, String, String) - Static method in class org.generationcp.core.LSIDUtils

Creates a well formed LSID from the given parts.

createObjectID(Object) - Static method in class org.generationcp.core.AbstractDataComponent

Return a unique identifier.

CRIL - Static variable in interface org.generationcp.core.ontology.Classification

A root classification for CRIL objects

CRIL_AUTHORITY - Static variable in interface org.generationcp.core.ontology.LSID

A string representing the authority part of the LSIDs used for the CRIL datasources and consumers

CROP_NAME - Static variable in interface org.generationcp.core.ontology.MetaData

A property name defining metadata.

D

DataComponent - Interface in org.generationcp.core

A parent of all basic components (data sources, data consumers and data transformers) - providing metadata for them (and perhaps more in the future.

DataConsumer - Interface in org.generationcp.core.dataconsumer

A GCP DataConsumer interface represents any consumer of the GCP data.

DataConsumerFactory - Interface in org.generationcp.core.dataconsumer

An interface defining factories (creators) of data consumers.

DataConsumerRegistry - Class in org.generationcp.core.dataconsumer

A class representing a registry that maintains a list of the data consumers that are available for the current application.

DataSource - Interface in org.generationcp.core.datasource

A data source represents any source of the GCP data - it can be a database, or a collection of Biomoby services, or a flat-file, or anything else.

DataSourceFactory - Interface in org.generationcp.core.datasource

An interface defining factories (creators) of data sources.

DataSourceRegistry - Class in org.generationcp.core.datasource

A class representing a registry that maintains a list of the data sources that are available for the current application.

DataTransformer - Interface in org.generationcp.core.datatransformer

Data Transformer is a component that accepts data and does something with it.

DataTransformerFactory - Interface in org.generationcp.core.datatransformer

An interface defining factories (creators) of data transformers.

DataTransformerRegistry - Class in org.generationcp.core.datatransformer

A class representing a registry that maintains a list of the data transformers that are available for the current application.

DataType - Interface in org.generationcp.core

A DataType is an interface that represents a GCP data type.

DATATYPE_ATTRIBUTE_ID_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

The first part of a data type attribute identifier string

DATATYPE_ID_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

The first part of a data type identifier string

DataTypeAttribute - Interface in org.generationcp.core

An interface defining a single attribute, usually used when one defines searchable attributes for a data source.

DefaultDataType - Class in org.generationcp.core

A default implementation of the DataType interface.

DefaultDataType(String) - Constructor for class org.generationcp.core.DefaultDataType

A constructor creating a data type with the given identifier, using it also for the data type 'name'.

DefaultDataType(String, String) - Constructor for class org.generationcp.core.DefaultDataType

A usual constructor.

DefaultDataTypeAttribute - Class in org.generationcp.core

A default implementation of the DataTypeAttribute interface.

DefaultDataTypeAttribute(String, String) - Constructor for class org.generationcp.core.DefaultDataTypeAttribute

A usual constructor.

DefaultDataTypeAttribute(String) - Constructor for class org.generationcp.core.DefaultDataTypeAttribute

A constructor, using unique identifer also for a name.

DefaultDeserializer - Class in org.generationcp.core.events

A default implementation of the EventDeserializer that recognizes standard events.

DefaultDeserializer() - Constructor for class org.generationcp.core.events.DefaultDeserializer

DefaultEventListener - Class in org.generationcp.core.events

A default implementation of the PropertyChangeListener - which means that it can registered as a listener of a PropertyChannel.

DefaultEventListener() - Constructor for class org.generationcp.core.events.DefaultEventListener

A default constructor that sets the log to a default one, level to DEBEG and ignores all heartbeat progress events.

DefaultEventListener(Log, int, boolean) - Constructor for class org.generationcp.core.events.DefaultEventListener

A constructor setting listener properties.

DefaultIdentification - Class in org.generationcp.core

A default implementation of the Identification interface.

DefaultIdentification(String, String) - Constructor for class org.generationcp.core.DefaultIdentification

DefaultIdentification(String, String, String) - Constructor for class org.generationcp.core.DefaultIdentification

DefaultIdentification(String, String, String, String[]) - Constructor for class org.generationcp.core.DefaultIdentification

DefaultIdentification(Identification) - Constructor for class org.generationcp.core.DefaultIdentification

DefaultPropertyChannel - Class in org.generationcp.core

A default implementation of a property channel, keeping properties in the memory.

DefaultPropertyChannel() - Constructor for class org.generationcp.core.DefaultPropertyChannel

Default constructor.

DELIMITER - Static variable in interface org.generationcp.core.ontology.LSID

Delimiter used for separating the different parts of the LSID

DELIMITER - Static variable in interface org.generationcp.core.ontology.Option

Defines what string should be used in delimiting cells in strings for tabular and other data .

DEMETER_AUTHORITY - Static variable in interface org.generationcp.core.ontology.LSID

A string representing the authority part of the LSIDs used for the ontology terms defined by demeter.

deserialize(Object, String) - Method in class org.generationcp.core.events.DefaultDeserializer

deserialize(Object, File) - Method in class org.generationcp.core.events.DefaultDeserializer

deserialize(Object, String) - Method in interface org.generationcp.core.events.EventDeserializer

Create an object representing an event from 'xmlEvent'.

deserialize(Object, File) - Method in interface org.generationcp.core.events.EventDeserializer

Create an object representing an event from XML stored in given file.

DISTINCT - Static variable in interface org.generationcp.core.ontology.Option

Defines that the returned list will behave as a set.

E

EQUAL - Static variable in interface org.generationcp.core.ontology.Operator

An operator for equality.

EQUAL_IN - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "equal_in".

equals(Object) - Method in class org.generationcp.core.ConsumableType

Equality is based on valueCategory, value, context and asCollection and NOT unique identifier, name, classification, etc.

equals(Object) - Method in class org.generationcp.core.DefaultDataType

equals(Object) - Method in class org.generationcp.core.DefaultIdentification

The two objects are considered equal if their unique identifiers are equal.

equivalent(ConsumableType) - Method in class org.generationcp.core.ConsumableType

EventConstants - Class in org.generationcp.core.events

A collection of constants used by events in XML format.

EventConstants() - Constructor for class org.generationcp.core.events.EventConstants

EventDeserializer - Interface in org.generationcp.core.events

An interface whose implementations can re-create events (Java objects) from their XML representation.

extractNamespace(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the "Namespace" part of the given LSID.

extractObjectId(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the "Object ID" part of the given LSID.

F

FIELD_DELIMITER - Static variable in interface org.generationcp.core.ontology.LSID

Delimiter used for separating the full class name and a field name of a data type attribute identifier string

find(String, SearchFilter[], String[], Map<String, Object>) - Method in interface org.generationcp.core.datasource.DataSource

Retrieve data from this data source.

fire(String, Object) - Method in class org.generationcp.core.DefaultPropertyChannel

fire(Object, String, Object) - Method in class org.generationcp.core.DefaultPropertyChannel

fire(String, Object) - Method in interface org.generationcp.core.PropertyChannel

Fire an event to any registered listeners.

fire(Object, String, Object) - Method in interface org.generationcp.core.PropertyChannel

Fire an event to any registered listeners.

fireHeartbeatProgress(String) - Method in class org.generationcp.core.events.ProgressSupport

fireHeartbeatProgress(String, String) - Method in class org.generationcp.core.events.ProgressSupport

fireHeartbeatProgress(HeartbeatProgressEvent) - Method in class org.generationcp.core.events.ProgressSupport

fireHeartbeatProgress(HeartbeatProgressEvent, String) - Method in class org.generationcp.core.events.ProgressSupport

firePercentProgress(String, float) - Method in class org.generationcp.core.events.ProgressSupport

firePercentProgress(String, float, String) - Method in class org.generationcp.core.events.ProgressSupport

firePercentProgress(PercentProgressEvent) - Method in class org.generationcp.core.events.ProgressSupport

firePercentProgress(PercentProgressEvent, String) - Method in class org.generationcp.core.events.ProgressSupport

fireStateChange(String, String, String) - Method in class org.generationcp.core.events.ProgressSupport

fireStateChange(String, String, String, String) - Method in class org.generationcp.core.events.ProgressSupport

fireStateChange(StateChangeEvent) - Method in class org.generationcp.core.events.ProgressSupport

fireStateChange(StateChangeEvent, String) - Method in class org.generationcp.core.events.ProgressSupport

fireStepProgress(String, int, int) - Method in class org.generationcp.core.events.ProgressSupport

fireStepProgress(String, int, int, String) - Method in class org.generationcp.core.events.ProgressSupport

fireStepProgress(StepProgressEvent) - Method in class org.generationcp.core.events.ProgressSupport

fireStepProgress(StepProgressEvent, String) - Method in class org.generationcp.core.events.ProgressSupport

fireTimeProgress(String, long) - Method in class org.generationcp.core.events.ProgressSupport

fireTimeProgress(String, long, String) - Method in class org.generationcp.core.events.ProgressSupport

fireTimeProgress(TimeProgressEvent) - Method in class org.generationcp.core.events.ProgressSupport

fireTimeProgress(TimeProgressEvent, String) - Method in class org.generationcp.core.events.ProgressSupport

FOR_PEDIGREE_NODE - Static variable in interface org.generationcp.core.ontology.Option

A boolean option which determines if the Germplasm object to be returned should contain all the info needed for a pedigree node.

formatAndLog(Throwable, Log) - Static method in exception org.generationcp.core.GCPException

Format given exception 'e' depending on how serious it it.

formatError(Throwable) - Static method in class org.generationcp.core.AbstractDataComponent

Format given exception.

formatSource() - Method in class org.generationcp.core.events.BaseEvent

Return a stringified version of this event's source.

G

GCP - Static variable in interface org.generationcp.core.ontology.Classification

The root classification for GCP objects

GCP_AUTHORITY - Static variable in interface org.generationcp.core.ontology.LSID

The authority for GCP objects for which there are previously agreed namespaces and object ids.

GCP_DOMAIN - Static variable in interface org.generationcp.core.ontology.Category

This category indicates that a value is a string containing a unique identifier of the GCP data types.

GCP_TEMPLATE - Static variable in interface org.generationcp.core.ontology.Category

This category indicates that the value(s) is a string containing a unique identifier of the GCP data templates.

GCPException - Exception in org.generationcp.core

A general exception which can be used as a wrapper around other exceptions.

GCPException() - Constructor for exception org.generationcp.core.GCPException

Constructs a new exception with null as its detail message.

GCPException(String) - Constructor for exception org.generationcp.core.GCPException

Constructs a new exception with the specified detail message.

GCPException(String, Throwable) - Constructor for exception org.generationcp.core.GCPException

Constructs a new exception with the specified detail message and cause.

get(Object) - Method in interface org.generationcp.core.PropertyChannel

Returns a value stored in this channel under given 'key'.

getAllowedValues() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

Allowed values is a list of possible values of this parameter.

getAttributeNameList() - Method in class org.generationcp.core.datasource.SearchFilter

getAttributeNames() - Method in class org.generationcp.core.datasource.SearchFilter

getAvailableAttributes() - Method in interface org.generationcp.core.DataType

Return a list of attributes that are available for this data type and therefore can be returned by the find()) method that asked for this data type.

getAvailableAttributes() - Method in class org.generationcp.core.DefaultDataType

getBoolean(Object, boolean) - Method in class org.generationcp.core.DefaultPropertyChannel

getBoolean(Object, boolean) - Method in interface org.generationcp.core.PropertyChannel

A convenient method returning a boolean value of the given property.

getClassification() - Method in class org.generationcp.core.DefaultIdentification

getClassification() - Method in interface org.generationcp.core.Identification

Gets the optional hierarchical category of what the entity belongs to.

getCompletedSteps() - Method in class org.generationcp.core.events.StepProgressEvent

Get the number of completed steps.

getComponent(Class<? extends Object>) - Method in interface org.generationcp.core.datasource.WritableDataSource

Determines if a data source provides the functionality defined in the requested interface or class

getContext() - Method in class org.generationcp.core.ConsumableType

getDataConsumer(String) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Gets a data consumer from this registry by its unique identifier.

getDataConsumers() - Method in interface org.generationcp.core.dataconsumer.DataConsumerFactory

Return all data consumers created by this factory.

getDataConsumers() - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Return all registered data consumers.

getDataConsumers(ConsumableType) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Return all registered data consumers that are able to consume given data, in the given context.

getDataConsumersByName(String) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Gets data consumers from this registry by name.

getDataSource(String) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Gets a data source from this registry by its unique identifier.

getDataSources() - Method in class org.generationcp.core.datasource.AbstractDataSourceFactory

Returns an array of DataSource objects in this factory.

getDataSources() - Method in interface org.generationcp.core.datasource.DataSourceFactory

Return all data sources created by this factory.

getDataSources() - Method in class org.generationcp.core.datasource.DataSourceRegistry

Return all registered data sources.

getDataSources(String) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Return all registered data sources that are able to provide given data type.

getDataSourcesByName(String) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Gets data sources from this registry by name.

getDataTransformer(String) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Gets a data transformer from this registry by its unique identifier.

getDataTransformers() - Method in interface org.generationcp.core.datatransformer.DataTransformerFactory

Return all data transformers created by this factory.

getDataTransformers() - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Return all registered data transformers.

getDataTransformers(ConsumableType) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Return all registered data transformers that are able to transform given data, in the given context.

getDataTransformersByName(String) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Gets data transformers from this registry by name.

getDataType(String) - Method in class org.generationcp.core.datasource.AbstractDataSource

getDataType(String) - Method in interface org.generationcp.core.datasource.DataSource

Check if this data source can provide a given data type.

getDataTypes() - Method in class org.generationcp.core.datasource.AbstractDataSource

getDataTypes() - Method in interface org.generationcp.core.datasource.DataSource

Return all data types that this data source can provide (can return by the find()) method).

getDataTypes() - Method in class org.generationcp.core.datasource.DataSourceRegistry

Return a (merged) set of all data types that can be provided at least by one registered data source.

getDefaultValue() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

A default value is a value that is used for a transformation when the end user does not provide any value for this parameter.

getDescription() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

getDescription() - Method in class org.generationcp.core.DefaultIdentification

getDescription() - Method in interface org.generationcp.core.Identification

Gets the optional description of what the entity is or does.

getIcon() - Method in class org.generationcp.core.dataconsumer.AbstractDataConsumer

getIcon() - Method in interface org.generationcp.core.dataconsumer.DataConsumer

An icon that can represent this data consumer in GUIs.

getId() - Method in enum org.generationcp.core.datatransformer.TransformationStatus

getInputType() - Method in class org.generationcp.core.datatransformer.TransformationDef

getLevel() - Method in class org.generationcp.core.events.DefaultEventListener

Return current loogging level.

getLog() - Method in class org.generationcp.core.events.DefaultEventListener

Return current logger.

getMessage() - Method in exception org.generationcp.core.datatransformer.TransformationParameterException

Format a single message from all messages we have here.

getMessage() - Method in class org.generationcp.core.events.BaseEvent

Get the main contents of this event.

getMessages() - Method in exception org.generationcp.core.datatransformer.TransformationParameterException

Return all collected messages.

getMetadata() - Method in class org.generationcp.core.AbstractDataComponent

getMetadata() - Method in interface org.generationcp.core.DataComponent

Return any additional details about this data component.

getMetadataItemArray(String) - Method in class org.generationcp.core.AbstractDataComponent

Find and return metadata item (identified by its 'name') in this component metadata.

getName() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

A name of this parameter that must be unique within a transformation where it is used.

getName() - Method in class org.generationcp.core.DefaultIdentification

getName() - Method in interface org.generationcp.core.Identification

Return a (usually more) human readable name of the entity being identified.

getNewState() - Method in class org.generationcp.core.events.StateChangeEvent

Get the new state as reported by this event.

getOperator() - Method in class org.generationcp.core.datasource.SearchFilter

getOutputTypes() - Method in class org.generationcp.core.datatransformer.TransformationDef

getParameterDefByName(String) - Method in class org.generationcp.core.datatransformer.TransformationDef

Get a parameter definition by parameter name.

getParameterDefs() - Method in class org.generationcp.core.datatransformer.TransformationDef

Get definitions of all acceptable parameters for this transformation.

getPercentage() - Method in class org.generationcp.core.events.PercentProgressEvent

Get the percentage.

getPreviousState() - Method in class org.generationcp.core.events.StateChangeEvent

Get the previous state as reported by this event.

getProcessId() - Method in class org.generationcp.core.events.ProgressListenerProxy

getProgressListeners() - Method in class org.generationcp.core.events.ProgressSupport

getProgressListeners(String) - Method in class org.generationcp.core.events.ProgressSupport

getProperties() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

Properties are additional features of this parameter.

getSearchableAttributes() - Method in interface org.generationcp.core.DataType

Return a list of attributes that can be used to select data of type defined by this data type.

getSearchableAttributes() - Method in class org.generationcp.core.DefaultDataType

getSource() - Method in class org.generationcp.core.events.BaseEvent

Get the event source (which may be null).

getStatus(String) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

getStatus(String) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Return a status of an underlying transformation.

getString(Object) - Method in class org.generationcp.core.DefaultPropertyChannel

getString(Object) - Method in interface org.generationcp.core.PropertyChannel

A convenient method returning value of the given property as a string.

getSupportedOperators() - Method in interface org.generationcp.core.DataTypeAttribute

What search operators can be used for this attribute.

getSupportedOperators() - Method in class org.generationcp.core.DefaultDataTypeAttribute

It returns null by default - which means that the supported operators defined for the whole data source are supposed to be supported also here.

getSupportedOptions(String) - Method in class org.generationcp.core.datasource.AbstractDataSource

getSupportedOptions(String) - Method in interface org.generationcp.core.datasource.DataSource

Options are additional features of this data source.

getTimeRemaining() - Method in class org.generationcp.core.events.TimeProgressEvent

Get the remaining time (in 100 nanoseconds).

getTimestamp() - Method in class org.generationcp.core.events.BaseEvent

Get the event timestamp.

getTotalSteps() - Method in class org.generationcp.core.events.StepProgressEvent

Get the number of total steps.

getTransformationDefById(String) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

getTransformationDefById(String) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Find a transformation by its ID.

getTransformationDefs() - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

getTransformationDefs() - Method in interface org.generationcp.core.datatransformer.DataTransformer

Get definitions of all transformations.

getType() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

A type of the value of this parameter, represented as its Java class.

getUIDComponents(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Deprecated. as of release 3.0.0 replaced by LSIDUtils.splitLSID(java.lang.String)

getUniqueIdentifier() - Method in class org.generationcp.core.DefaultIdentification

getUniqueIdentifier() - Method in interface org.generationcp.core.Identification

Return the unique identifier of the entity being identified.

getUniqueIdentifier(String, String, String, String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Deprecated. as of release 3.0.0 replaced by LSIDUtils.createLSID(java.lang.String, java.lang.String, java.lang.String, java.lang.String)

getValue() - Method in class org.generationcp.core.ConsumableType

getValueCategory() - Method in class org.generationcp.core.ConsumableType

getValueList() - Method in class org.generationcp.core.datasource.SearchFilter

getValues() - Method in class org.generationcp.core.datasource.SearchFilter

GT - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "greater-than".

GT_EQUAL - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "greater-than-or-equal-to".

H

handleBaseEvent(PropertyChangeEvent, BaseEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a general event occurs.

handleHeartbeatProgressEvent(PropertyChangeEvent, HeartbeatProgressEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a heartbeat progress event occurs.

handlePercentProgressEvent(PropertyChangeEvent, PercentProgressEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a percent progress event occurs.

handleStateChangeEvent(PropertyChangeEvent, StateChangeEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a state change event occurs.

handleStepProgressEvent(PropertyChangeEvent, StepProgressEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a step progress event occurs.

handleTimeProgressEvent(PropertyChangeEvent, TimeProgressEvent) - Method in class org.generationcp.core.events.DefaultEventListener

Do something when a time progress event occurs.

hasComponent(Class<? extends Object>) - Method in interface org.generationcp.core.datasource.WritableDataSource

Determines if a data source provides the functionality defined in the requested interface or class

hasDataConsumer(String) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Determines a specific a data consumer exists in this registy.

hasDataSource(String) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Determines a specific a data source exists in this registy.

hasDataTransformer(String) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Determines a specific a data transformer exists in this registy.

hashCode() - Method in class org.generationcp.core.ConsumableType

Compute a hashCode that combines valueCategory, value, context and asCollection.

hashCode() - Method in class org.generationcp.core.DefaultDataType

hashCode() - Method in class org.generationcp.core.DefaultIdentification

Compute a hashcode from the hashcode of the unique identifier.

hasListeners(String) - Method in class org.generationcp.core.events.ProgressSupport

heartbeatProgress(HeartbeatProgressEvent) - Method in interface org.generationcp.core.events.ProgressListener

Do something when a heartbeat progress event occurs.

heartbeatProgress(HeartbeatProgressEvent) - Method in class org.generationcp.core.events.ProgressListenerProxy

HeartbeatProgressEvent - Class in org.generationcp.core.events

A class representing an event that indicates that the underlying process is still in progress.

HeartbeatProgressEvent() - Constructor for class org.generationcp.core.events.HeartbeatProgressEvent

A usual constructor, taking nothing.

HeartbeatProgressEvent(Object, String) - Constructor for class org.generationcp.core.events.HeartbeatProgressEvent

The most general constructor, taking a message, and the event source.

I

ID - Static variable in interface org.generationcp.core.ontology.Operator

An ontology term defining a unique identifier for an operator for "id".

Identification - Interface in org.generationcp.core

A basic interface to identify GCP entities.

ignoreHeartbeats(boolean) - Method in class org.generationcp.core.events.DefaultEventListener

Set how to deal with (possibly many) HeartbeatProgressEvents.

IMAGE_GIF - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IMAGE_ICON - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IMAGE_JPEG - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IMAGE_PNG - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IMAGE_SVG_XML - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IMAGE_TIFF - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

IN - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "in".

instance() - Static method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

The only way how to create a DataConsumerRegistry instance (because there are no public constructors in this class).

instance() - Static method in class org.generationcp.core.datasource.DataSourceRegistry

The only way how to create a DataSourceRegistry instance (because there are no public constructors in this class).

instance() - Static method in class org.generationcp.core.datatransformer.DataTransformerRegistry

The only way how to create a DataTransformerRegistry instance (because there are no public constructors in this class).

isAsCollection() - Method in class org.generationcp.core.ConsumableType

isCompleted() - Method in enum org.generationcp.core.datatransformer.TransformationStatus

isErroneous() - Method in enum org.generationcp.core.datatransformer.TransformationStatus

isIgnoreHeartbeats() - Method in class org.generationcp.core.events.DefaultEventListener

Get the current value of dealing with (possibly many) HeartbeatProgressEvents.

isMandatory() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

Return true if this parameter is mandatory for a given transformation.

isOlderThan(BaseEvent) - Method in class org.generationcp.core.events.BaseEvent

Compare this event with the 'newEvent'.

isValidDataTypeAttributeIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Determines if a simple identifier has the valid syntax for a Data Type Attribute identifier.

isValidDataTypeIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Determines if a simple identifier has the valid syntax for a Data Type identifier.

isValidIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

ISYS - Static variable in interface org.generationcp.core.ontology.Context

It defines an "ISYS" context.

L

LIKE - Static variable in interface org.generationcp.core.ontology.Operator

An operator similar to the SQL's LIKE operator.

LIKE_IN - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "like_in".

LSID - Interface in org.generationcp.core.ontology

Predefined constants used for the construction of valid LSID for Pantheon

LSID_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

Prefix used for LSID 'lsid:'

LSIDUtils - Class in org.generationcp.core

A utility class helping with LSIDs.

LSIDUtils() - Constructor for class org.generationcp.core.LSIDUtils

LT - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "lower-than".

LT_EQUAL - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "lower-than-or-equal-to".

M

MetaData - Interface in org.generationcp.core.ontology

Predefined constants for meta data, used in DataSources.

MIME - Interface in org.generationcp.core.ontology

Predefined constants for various MIME types, used in DataSources.

MIME_TYPE - Static variable in interface org.generationcp.core.ontology.Category

This category indicates that the values are MIME types.

MutableIdentification - Interface in org.generationcp.core

A basic interface to identify mutable GCP entities.

N

NAMESPACE - Static variable in interface org.generationcp.core.ontology.Operator

A string representing the namespace part of the LSIDs used for the ontology terms defined by this interface.

NCBI_AUTHORITY - Static variable in interface org.generationcp.core.ontology.LSID

A string representing the authority part of the LSIDs used for the NCBI datasources and consumers

NOT_EQUAL - Static variable in interface org.generationcp.core.ontology.Operator

An operator for not equality.

O

OntologyUtils - Class in org.generationcp.core.ontology

Utilities for parsing the unique identifiers associated with Pantheon components

OntologyUtils() - Constructor for class org.generationcp.core.ontology.OntologyUtils

Operator - Interface in org.generationcp.core.ontology

Predefined constants for various operators, used in SearchFilter search filters.

Option - Interface in org.generationcp.core.ontology

Predefined constants for various options, used in DataSources.

org.generationcp.core - package org.generationcp.core

This package contains all core pantheon interfaces, abstract classes and classes.

org.generationcp.core.dataconsumer - package org.generationcp.core.dataconsumer

This package contains classes related to data consumers.

org.generationcp.core.datasource - package org.generationcp.core.datasource

This package contains classes related to data sources.

org.generationcp.core.datatransformer - package org.generationcp.core.datatransformer

This package contains classes related to data transformers.

org.generationcp.core.events - package org.generationcp.core.events

This package contains all classes in relation to Events.

org.generationcp.core.ontology - package org.generationcp.core.ontology

This package contains classes used for ontologies and pantheon-specific consstants.

OUR_MULTI_LINE_STYLE - Static variable in class org.generationcp.core.DefaultIdentification

P

parseCompositeIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Parses a composite identifier (e.g. attribute of attribute etc) into component simple identifier.

parseSimpleIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Parses a data type or data type attribute identifier to a class if possible.

percentProgress(PercentProgressEvent) - Method in interface org.generationcp.core.events.ProgressListener

Do something when a percent progress event occurs.

percentProgress(PercentProgressEvent) - Method in class org.generationcp.core.events.ProgressListenerProxy

PercentProgressEvent - Class in org.generationcp.core.events

A class representing an event that reports the time percentage of the underlying process.

PercentProgressEvent(Object, String, float) - Constructor for class org.generationcp.core.events.PercentProgressEvent

The most general constructor, taking a message, percentage, and the event source.

PercentProgressEvent(String, float) - Constructor for class org.generationcp.core.events.PercentProgressEvent

A constructor taking a general message and percentage.

PercentProgressEvent(float) - Constructor for class org.generationcp.core.events.PercentProgressEvent

A usual constructor, taking just the percentage.

PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

Prefix used for LSID strings, 'urn:lsid:'

PREFIX - Static variable in interface org.generationcp.core.ontology.Operator

A string prefixed to all ontology terms defined by this interface.

PROGRESS_EVENT_LISTENER - Static variable in interface org.generationcp.core.ontology.Option

Defines a event listener for a query task.

ProgressListener - Interface in org.generationcp.core.events

Interface for classes that listen to process events

ProgressListenerProxy - Class in org.generationcp.core.events

Provides support for process listening for a specific process

ProgressListenerProxy(String, ProgressListener) - Constructor for class org.generationcp.core.events.ProgressListenerProxy

ProgressSupport - Class in org.generationcp.core.events

Provides general support for process listening

ProgressSupport(Object) - Constructor for class org.generationcp.core.events.ProgressSupport

PROP_PROMPT - Static variable in class org.generationcp.core.datatransformer.TransformationParameterDef

A parameter property name.

PROP_SUPPORTED_OPERATORS - Static variable in interface org.generationcp.core.ontology.MetaData

A property name defining metadata.

propertyChange(PropertyChangeEvent) - Method in class org.generationcp.core.events.DefaultEventListener

It ignores events without new value and those with new value that does not inherit from the BaseEvent.

PropertyChannel - Interface in org.generationcp.core

PropertyChannel is an interface describing a device that can be used to exchange data and events between components, and to store them in a shareable storage.

put(Object, Object) - Method in class org.generationcp.core.DefaultPropertyChannel

put(Object, Object, Object) - Method in class org.generationcp.core.DefaultPropertyChannel

put(Object, Object) - Method in interface org.generationcp.core.PropertyChannel

Maps the specified key to the specified value in the channel.

put(Object, Object, Object) - Method in interface org.generationcp.core.PropertyChannel

Maps the specified key to the specified value in this channel.

R

RCP - Static variable in interface org.generationcp.core.ontology.Context

It defines a "Java RCP" context.

REFERENCE_MIME_TYPE - Static variable in interface org.generationcp.core.ontology.Option

Defines what MIME type is requested for Reference objects.

REFERENCE_URL - Static variable in interface org.generationcp.core.ontology.Option

Defines the URL used in queries for Reference and TabularDataReference objects.

release(String, boolean) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

release(boolean) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

release(String, boolean) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Release all resources used by the underlying transformation.

release(boolean) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Release all resources used by all, so far created, transformations.

remove(Object) - Method in interface org.generationcp.core.PropertyChannel

Remove a property given by 'key' from this channel.

removeDataConsumer(DataConsumer) - Method in class org.generationcp.core.dataconsumer.DataConsumerRegistry

Remove a data consumer from this registry.

removeDataSource(DataSource) - Method in class org.generationcp.core.datasource.DataSourceRegistry

Remove a data source from this registry.

removeDataTransformer(DataTransformer) - Method in class org.generationcp.core.datatransformer.DataTransformerRegistry

Remove a data transformer from this registry.

removeProgressListener(ProgressListener) - Method in interface org.generationcp.core.datasource.WritableDataSource

Remove a previously added listener for progress events with in the data source.

removeProgressListener(ProgressListener, String) - Method in interface org.generationcp.core.datasource.WritableDataSource

Remove a listener for a specific process with in the data source.

removeProgressListener(ProgressListener) - Method in class org.generationcp.core.events.ProgressSupport

removeProgressListener(String, ProgressListener) - Method in class org.generationcp.core.events.ProgressSupport

removePropertyChangeListener(PropertyChangeListener) - Method in class org.generationcp.core.DefaultPropertyChannel

removePropertyChangeListener(PropertyChangeListener) - Method in interface org.generationcp.core.PropertyChannel

Unregister a listener.

removeVersion(String) - Static method in class org.generationcp.core.LSIDUtils

Remove the version ("release") form the given 'lsid'.

reset() - Static method in class org.generationcp.core.datasource.DataSourceRegistry

Forget current (already loaded) data sources and data source factories.

resolveAuthority(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the Authority part of the given LSID.

resolveAuthority(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Deprecated. as of release 3.0.0 replaced by LSIDUtils.resolveAuthority(java.lang.String)

resolveNamespace(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the Namespace part of the given LSID.

resolveObjectId(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the Object ID part of the given LSID.

resolveObjectIdentifier(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Deprecated. as of release 3.0.0 replaced by LSIDUtils.resolveObjectId(java.lang.String)

resolveVersion(String) - Static method in class org.generationcp.core.LSIDUtils

Extract and return the Version part of the given LSID.

resolveVersion(String) - Static method in class org.generationcp.core.ontology.OntologyUtils

Deprecated. as of release 3.0.0 replaced by LSIDUtils.resolveVersion(java.lang.String)

retrieveClass() - Method in class org.generationcp.core.ConsumableType

Find of what class the data of this consumable type should be.

S

SearchFilter - Class in org.generationcp.core.datasource

Search filters are used to specify search criteria when a data source is asked for data.

SearchFilter() - Constructor for class org.generationcp.core.datasource.SearchFilter

A no-arg constructor.

SearchFilter(String[], Object[]) - Constructor for class org.generationcp.core.datasource.SearchFilter

SearchFilter(String, Object[]) - Constructor for class org.generationcp.core.datasource.SearchFilter

SearchFilter(String[], String, Object[]) - Constructor for class org.generationcp.core.datasource.SearchFilter

SearchFilter(String, String, Object) - Constructor for class org.generationcp.core.datasource.SearchFilter

SearchFilter(String, String, Object[]) - Constructor for class org.generationcp.core.datasource.SearchFilter

setAllowedValues(Object[]) - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

Clear the current allowed values and replace them by a new set.

setAttributeNames(String[]) - Method in class org.generationcp.core.datasource.SearchFilter

setAvailableAttributes(DataTypeAttribute[]) - Method in class org.generationcp.core.DefaultDataType

Replace all current "available" attributes (this instance knows about) by new ones.

setClassification(String[]) - Method in class org.generationcp.core.DefaultIdentification

setClassification(String[]) - Method in interface org.generationcp.core.MutableIdentification

Sets the optional hierarchical category of what the entity belongs to.

setDataTypes(DataType[]) - Method in class org.generationcp.core.datasource.AbstractDataSource

Adds DataTypes specifications to a local map of known data types

setDefaultValue(Object) - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

setDescription(String) - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

setDescription(String) - Method in class org.generationcp.core.DefaultIdentification

setDescription(String) - Method in interface org.generationcp.core.MutableIdentification

Sets the optional description of what the entity is or does.

setIcon(Object) - Method in class org.generationcp.core.dataconsumer.AbstractDataConsumer

setInputType(ConsumableType) - Method in class org.generationcp.core.datatransformer.TransformationDef

Set the input type that this transformation can consume.

setInputType(String) - Method in class org.generationcp.core.datatransformer.TransformationDef

Create a new consumable type and set it as an input type of this transformation.

setLevel(int) - Method in class org.generationcp.core.events.DefaultEventListener

Set wanted loogging level.

setLevel(String) - Method in class org.generationcp.core.events.DefaultEventListener

Set wanted loogging level.

setLog(Log) - Method in class org.generationcp.core.events.DefaultEventListener

Set logger.

setMetaData(Map<String, Object>) - Method in class org.generationcp.core.AbstractDataComponent

Replace all currently stored metadata with the given ones.

setName(String) - Method in class org.generationcp.core.DefaultIdentification

setName(String) - Method in interface org.generationcp.core.MutableIdentification

Sets a (usually more) human readable name of the entity being identified.

setOperator(String) - Method in class org.generationcp.core.datasource.SearchFilter

setOutputTypes(List<ConsumableType>) - Method in class org.generationcp.core.datatransformer.TransformationDef

Clear the current set of supported output types and replace them by a new set.

setParameters(List<TransformationParameterDef>) - Method in class org.generationcp.core.datatransformer.TransformationDef

Clear the current parameter definitions and replace them by a new set.

setSearchableAttributes(DataTypeAttribute[]) - Method in class org.generationcp.core.DefaultDataType

Replace all current searchable attributes (this instance knows about) by new ones.

setSupportedOperators(String[]) - Method in class org.generationcp.core.DefaultDataTypeAttribute

Setter for "supported operators" (specified as a String ontology).

setTimestamp(Date) - Method in class org.generationcp.core.events.BaseEvent

Set the event timestamp.

setTransformationDefs(TransformationDef...) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

Clear the list of supported transfomations and replace it by a new set.

setUniqueIdentifier(String) - Method in interface org.generationcp.core.MutableIdentification

Sets the unique identifier of the entity being identified.

setValueCategory(String) - Method in class org.generationcp.core.ConsumableType

setValues(Object[]) - Method in class org.generationcp.core.datasource.SearchFilter

SORT_ORDER - Static variable in interface org.generationcp.core.ontology.Option

Defines how the results should be sorted.

SORTED_BY - Static variable in interface org.generationcp.core.ontology.Option

Defines data type attributes that can be used as sorting keys.

splitLSID(String) - Static method in class org.generationcp.core.LSIDUtils

Split the LSID into component parts.

stateChange(StateChangeEvent) - Method in interface org.generationcp.core.events.ProgressListener

Do something when a state change event occurs.

stateChange(StateChangeEvent) - Method in class org.generationcp.core.events.ProgressListenerProxy

StateChangeEvent - Class in org.generationcp.core.events

A class representing an event that characterizes a change of state of the underlying process.

StateChangeEvent(Object, String, String, String) - Constructor for class org.generationcp.core.events.StateChangeEvent

The most general constructor, taking a message, the two states, the old and new one, and an event source.

StateChangeEvent(String, String, String) - Constructor for class org.generationcp.core.events.StateChangeEvent

A constructor taking a general message and two states, the old and new one.

StateChangeEvent(String, String) - Constructor for class org.generationcp.core.events.StateChangeEvent

A usual constructor, taking just two states, the old and new one.

stepProgress(StepProgressEvent) - Method in interface org.generationcp.core.events.ProgressListener

Do something when a step progress event occurs.

stepProgress(StepProgressEvent) - Method in class org.generationcp.core.events.ProgressListenerProxy

StepProgressEvent - Class in org.generationcp.core.events

A class representing an event that reports the numnber of total and completed steps for the underlying process.

StepProgressEvent(Object, String, int, int) - Constructor for class org.generationcp.core.events.StepProgressEvent

The most general constructor, taking a message, number of total and completed steps, and the event source.

StepProgressEvent(String, int, int) - Constructor for class org.generationcp.core.events.StepProgressEvent

A constructor taking a general message and number of total and completed steps.

StepProgressEvent(int, int) - Constructor for class org.generationcp.core.events.StepProgressEvent

A usual constructor, taking just the number of total and completed steps.

SUBSTR - Static variable in interface org.generationcp.core.ontology.Operator

An operator expressing "contains" (or: a value is a substring of the attribute being search against).

SWING - Static variable in interface org.generationcp.core.ontology.Context

It defines a "Java Swing" context.

T

terminate(String) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

terminate(String) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Terminate the underlying transformation.

TEXT_CSV - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

TEXT_PLAIN - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

TEXT_TXT - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

TEXT_XML - Static variable in interface org.generationcp.core.ontology.MIME

A name of a value.

timeProgress(TimeProgressEvent) - Method in interface org.generationcp.core.events.ProgressListener

Do something when a time progress event occurs.

timeProgress(TimeProgressEvent) - Method in class org.generationcp.core.events.ProgressListenerProxy

TimeProgressEvent - Class in org.generationcp.core.events

A class representing an event that reports the remaining time of the underlying process.

TimeProgressEvent(Object, String, long) - Constructor for class org.generationcp.core.events.TimeProgressEvent

The most general constructor, taking a message, remaining time (in 100 nanoseconds), and the event source.

TimeProgressEvent(String, long) - Constructor for class org.generationcp.core.events.TimeProgressEvent

A constructor taking a general message and , remaining time (in 100 nanoseconds).

TimeProgressEvent(long) - Constructor for class org.generationcp.core.events.TimeProgressEvent

A usual constructor, taking just the remaining time (in 100 nanoseconds).

toString() - Method in class org.generationcp.core.ConsumableType

toString() - Method in class org.generationcp.core.datasource.SearchFilter

toString() - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

toString() - Method in class org.generationcp.core.datatransformer.TransformationDef

toString() - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

toString() - Method in class org.generationcp.core.DefaultDataType

toString() - Method in class org.generationcp.core.DefaultDataTypeAttribute

toString() - Method in class org.generationcp.core.DefaultIdentification

toString() - Method in class org.generationcp.core.events.BaseEvent

Return a stringified version of this event - in an XML format.

toXML() - Method in class org.generationcp.core.events.BaseEvent

Create an XML element representing this event.

toXML() - Method in class org.generationcp.core.events.HeartbeatProgressEvent

Create an XML element representing this event.

toXML() - Method in class org.generationcp.core.events.PercentProgressEvent

Create an XML element representing this event.

toXML() - Method in class org.generationcp.core.events.StateChangeEvent

Create an XML element representing this event.

toXML() - Method in class org.generationcp.core.events.StepProgressEvent

Create an XML element representing this event.

toXML() - Method in class org.generationcp.core.events.TimeProgressEvent

Create an XML element representing this event.

transform(PropertyChannel, String, String, Map<String, Object>) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

This implementation does here many checking and then it passes input data to the protected transform method where the real meat is cooked.

transform(PropertyChannel, String, String, Map<String, Object>) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Transform data.

transformAndWaitFor(Object, String, Map<String, Object>) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

transformAndWaitFor(Object, String, Map<String, Object>) - Method in interface org.generationcp.core.datatransformer.DataTransformer

A convenient method that simplifies the basic usage of DataTransformers.

TRANSFORMATION_ELAPSED - Static variable in interface org.generationcp.core.datatransformer.DataTransformer

A name of metadata.

TRANSFORMATION_ENDED - Static variable in interface org.generationcp.core.datatransformer.DataTransformer

A name of metadata.

TRANSFORMATION_STARTED - Static variable in interface org.generationcp.core.datatransformer.DataTransformer

A name of metadata.

TransformationDef - Class in org.generationcp.core.datatransformer

A class defining how to transform data.

TransformationDef(String) - Constructor for class org.generationcp.core.datatransformer.TransformationDef

TransformationDef(String, String) - Constructor for class org.generationcp.core.datatransformer.TransformationDef

TransformationDef(String, String, String) - Constructor for class org.generationcp.core.datatransformer.TransformationDef

TransformationDef(String, String, String, String[]) - Constructor for class org.generationcp.core.datatransformer.TransformationDef

A constructor allowing a full identification.

TransformationParameterDef - Class in org.generationcp.core.datatransformer

A class defining a parameter for a transformation.

TransformationParameterDef(String, Class, boolean) - Constructor for class org.generationcp.core.datatransformer.TransformationParameterDef

A default constructor.

TransformationParameterDef(String, Class) - Constructor for class org.generationcp.core.datatransformer.TransformationParameterDef

A convenient constructor, assuming that the parameter is not mandatory.

TransformationParameterDef(String) - Constructor for class org.generationcp.core.datatransformer.TransformationParameterDef

A convenient constructor, assuming that the type of the parameter is java.util.String and that the parameter is not mandatory.

TransformationParameterException - Exception in org.generationcp.core.datatransformer

The exception used to report errors when validating input values for a data transformation.

TransformationParameterException() - Constructor for exception org.generationcp.core.datatransformer.TransformationParameterException

A no-arg constructor.

TransformationParameterException(String) - Constructor for exception org.generationcp.core.datatransformer.TransformationParameterException

Use this constructor if the error is not traceable to any individual parameter, or not to only one parameter.

TransformationParameterException(String, String) - Constructor for exception org.generationcp.core.datatransformer.TransformationParameterException

A constructor accepting one error message for a given transformation parameter.

TransformationStatus - Enum in org.generationcp.core.datatransformer

Constants defining a status of a transformation.

TYPE_DELIMITER - Static variable in interface org.generationcp.core.ontology.LSID

Delimiter used for separating the different parts of a data type attribute identifier string

U

UID - Static variable in interface org.generationcp.core.ontology.Operator

An operator for "uid".

UID_IN - Static variable in interface org.generationcp.core.ontology.Operator

Deprecated. As of 2.7.0, replaced by Operator.EQUAL_IN.

URN_PREFIX - Static variable in interface org.generationcp.core.ontology.LSID

Prefix used for URN 'urn:'

USE_CASE - Static variable in interface org.generationcp.core.ontology.MetaData

A property name defining metadata.

USE_CASE_SOURCE - Static variable in interface org.generationcp.core.ontology.MetaData

A property name defining metadata.

V

validate(Map<String, Object>) - Method in class org.generationcp.core.datatransformer.TransformationDef

This method validates acceptability of the given parameter names, their values (this is, however, delegated to parameters themselves), and, potentially (but not in this implementation), dependencies between all parameter values.

validate(Object) - Method in class org.generationcp.core.datatransformer.TransformationParameterDef

This method is intended to validate the given 'value' in order to find whether it can be used for this parameter.

VALIDATOR_CONFIG_FILENAME - Static variable in interface org.generationcp.core.ontology.MetaData

A property name defining metadata.

validSearchParameters(String, SearchFilter[], String[], Map<String, Object>) - Method in class org.generationcp.core.datasource.AbstractDataSource

The DataSource.find(String, SearchFilter[], String[], Map) method can delegate validation of its search parameters to this method.

valueOf(String) - Static method in enum org.generationcp.core.datatransformer.TransformationStatus

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.generationcp.core.datatransformer.TransformationStatus

Returns an array containing the constants of this enum type, in the order they are declared.

W

waitFor(String) - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

waitFor() - Method in class org.generationcp.core.datatransformer.AbstractDataTransformer

waitFor(String) - Method in interface org.generationcp.core.datatransformer.DataTransformer

Block the caller (of this method) until the underlying transformation is completed.

waitFor() - Method in interface org.generationcp.core.datatransformer.DataTransformer

Block the caller (of this method) until all underlying transformations (invoked so far in this data transformer) are completed.

WEB - Static variable in interface org.generationcp.core.ontology.Context

It defines a "Web" context.

WritableDataSource - Interface in org.generationcp.core.datasource

A writable data source.

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